man graphlan (1): circular representations of taxonomic and phylogenetic trees

SYNOPSIS

graphlan [-h] [--format ['output_image_format']] [--warnings WARNINGS] [--positions POSITIONS] [--dpi image_dpi] [--size image_size] [--pad pad_in] [--external_legends] [-v] input_tree output_image

DESCRIPTION

GraPhlAn is a software tool for producing high-quality circular representations of taxonomic and phylogenetic trees. It focuses on concise, integrative, informative, and publication-ready representations of phylogenetically- and taxonomically-driven investigation.

OPTIONS

positional arguments:

input_tree: the input tree in PhyloXML format
output_image: the output image, the format is guessed from the extension unless --format is given. Available file formats are: png, pdf, ps, eps, svg

optional arguments:

-h, --help: show this help message and exit
--format ['output_image_format']: set the format of the output image (default none meaning that the format is guessed from the output file extension)
--warnings WARNINGS: set whether warning messages should be reported or not (default 1)
--positions POSITIONS: set whether the absolute position of the points should be reported on the standard output. The two cohordinates are r and theta
--dpi image_dpi: the dpi of the output image for non vectorial formats
--size image_size: the size of the output image (in inches, default 7.0)
--pad pad_in: the distance between the most external graphical element and the border of the image
--external_legends: specify whether the two external legends should be put in separate file or keep them along with the image (default behavior)
-v, --version: Prints the current GraPhlAn version and exit

AUTHOR

The software was written by Nicola Segata <[email protected]>