graphlan_annotate(1) GraPhlAn annotate module


graphlan_annotate [-h] [--annot annotation_file] [-v] input_tree [output_tree]


GraPhlAn is a software tool for producing high-quality circular representations of taxonomic and phylogenetic trees. It focuses on concise, integrative, informative, and publication-ready representations of phylogenetically- and taxonomically-driven investigation.

graphlan_annotate is the annotate module of graphlan(1).


positional arguments:

the input tree in Newick, Nexus, PhyloXML or plain text format
the output tree in PhyloXML format containing the newly added annotations. If not specified, the input tree file will be overwritten

optional arguments:

-h, --help
show this help message and exit
--annot annotation_file
specify the annotation file
-v, --version
Prints the current GraPhlAn version and exit


The software was written by Nicola Segata <[email protected]>

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.