SYNOPSIS
-
infoseq -sequence seqall -columns boolean -delimiter string [-outfile outfile] [-html boolean] -only boolean -heading boolean -usa boolean -database boolean -name boolean -accession boolean -gi boolean -seqversion boolean -type boolean -length boolean -pgc boolean -organism boolean -description boolean
- infoseq -help
DESCRIPTION
infoseq
OPTIONS
Input section
-sequence seqall
Advanced section
-columns boolean
- Set this option on (Y) to print the sequence information into neat, aligned columns in the output file. Alternatively, leave it unset (N), in which case the information records will be delimited by a character, which you may specify by using the -delimiter option. In other words, if -columns is set on, the -delimiter option is overriden. Default value: Y
-delimiter string
- This string, which is usually a single character only, is used to delimit individual records in the text output file. It could be a space character, a tab character, a pipe character or any other character or string. Default value: |
Output section
-outfile outfile
- If you enter the name of a file here then this program will write the sequence details into that file. Default value: stdout
-html boolean
- Default value: N
-only boolean
- This is a way of shortening the command line if you only want a few things to be displayed. Instead of specifying: '-nohead -noname -noacc -notype -nopgc -nodesc' to get only the length output, you can specify '-only -length' Default value: N
-heading boolean
- Default value: Y
-usa boolean
- Default value: @(!$(only))
-database boolean
- Default value: @(!$(only))
-name boolean
- Default value: @(!$(only))
-accession boolean
- Default value: @(!$(only))
-gi boolean
- Default value: N
-seqversion boolean
- Default value: N
-type boolean
- Default value: @(!$(only))
-length boolean
- Default value: @(!$(only))
-pgc boolean
- Default value: @(!$(only))
-organism boolean
- Default value: @(!$(only))
-description boolean
- Default value: @(!$(only))
BUGS
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).
AUTHOR
Debian Med Packaging Team <[email protected]>
- Wrote the script used to autogenerate this manual page.
COPYRIGHT
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.