SYNOPSIS
kmc_tools compact <inputdb> [input_params] <output>
DESCRIPTION
This command removes counters from the database and stores only k-mers.
OPTIONS
For each input there are additional parameters:
-ci<value>
- exclude k-mers occurring less than <value> times
-cx<value>
- exclude k-mers occurring more of than <value> times
EXAMPLE
-
kmc_tools compact wy_kmc2 -ci3 -cx1000 wy_kmc1
AUTHOR
KMC was originally written by:
- • Sebastian Deorowicz (
- • Marek Kokot
- • Szymon Grabowski
- • Agnieszka Debudaj-Grabysz
COPYING
KMC is a free software distributed under GNU GPL3 licence for academic, research, and commercial use.