mapMers-depth(1) report information about mapping kmers to sequences


mapMers-depth {-count|-depth|-stats} -mers MERYL -m MERSIZE -seq IN.FASTA


Modes of operation

For sequence ordinal 's' and position in that sequence 'p':
reports the count (c) of the single kmer that starts at position (p).
Format: 's p c'
reports the number (n) of kmers that span position (p).
Format: 's p n'
reports the minimum (m), maximum (M), and average (a) count of all mers that span position (p). also reports total count (t) and number of kmers (n)
Format: 's p m M a t n'


-mers MERYL
meryl(1) database
fasta input sequence