mia-3dimagecreator(1) Create a synthetic 3D image.

SYNOPSIS

mia-3dimagecreator -o <out-file> [options]

DESCRIPTION

mia-3dimagecreator This program creates a 3D image that contains an object created by one of the object creator plug-ins (creator/3dimage)

OPTIONS

-o --out-file=(output, required); io
output file for create object For supported file types see PLUGINS:3dimage/io
-s --size=[128,128,128]
size of the objectsize of the object
-r --repn=ubyte
input pixel type
none - no pixel type defined
float - floating point 32 bit
sbyte - signed 8 bit
ulong - unsigned 64 bit
double - floating point 64 bit
sint - signed 32 bit
ushort - unsigned 16 bit
sshort - signed 16 bit
uint - unsigned 32 bit
slong - signed 64 bit
bit - binary data
ubyte - unsigned 8 bit
-j --object=sphere
object to be createdobject to be created For supported plugins see PLUGINS:3dimage/creator

Help & Info

-V --verbose=warning
verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:
info - Low level messages
trace - Function call trace
fail - Report test failures
warning - Warnings
error - Report errors
debug - Debug output
message - Normal messages
fatal - Report only fatal errors
--copyright
print copyright information
-h --help
print this help
-? --usage
print a short help
--version
print the version number and exit

Processing

--threads=-1
Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).

PLUGINS: 3dimage/creator

lattic
3D lattic creation program, supported parameters are:

fx = 16; float in [1, 64]
frequency in x-dir.

fy = 16; float in [1, 64]
frequency in y-dir.

fz = 16; float in [1, 64]
frequency in z-dir.

sphere
3D sphere creation program, supported parameters are:

f = 2; float in [0, 10]
spherical change frequency.

p = 2; float in [0.1, 100]
spherical shape parameter (2.0 = sphere).

PLUGINS: 3dimage/io

analyze
Analyze 7.5 image

Recognized file extensions: .HDR, .hdr

 
Supported element types:
unsigned 8 bit, signed 16 bit, signed 32 bit, floating point 32 bit, floating point 64 bit

 
datapool
Virtual IO to and from the internal data pool

Recognized file extensions: [email protected]

 
dicom
Dicom image series as 3D

Recognized file extensions: .DCM, .dcm

 
Supported element types:
signed 16 bit, unsigned 16 bit

 
hdf5
HDF5 3D image IO

Recognized file extensions: .H5, .h5

 
Supported element types:
binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, signed 64 bit, unsigned 64 bit, floating point 32 bit, floating point 64 bit

 
inria
INRIA image

Recognized file extensions: .INR, .inr

 
Supported element types:
signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit

 
mhd
MetaIO 3D image IO using the VTK implementation (experimental).

Recognized file extensions: .MHA, .MHD, .mha, .mhd

 
Supported element types:
signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit

 
nifti
NIFTI-1 3D image IO

Recognized file extensions: .NII, .nii

 
Supported element types:
signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, signed 64 bit, unsigned 64 bit, floating point 32 bit, floating point 64 bit

 
vff
VFF Sun raster format

Recognized file extensions: .VFF, .vff

 
Supported element types:
unsigned 8 bit, signed 16 bit

 
vista
Vista 3D

Recognized file extensions: .V, .VISTA, .v, .vista

 
Supported element types:
binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit

 
vti
3D image VTK-XML in- and output (experimental).

Recognized file extensions: .VTI, .vti

 
Supported element types:
signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit

 
vtk
3D VTK image legacy in- and output (experimental).

Recognized file extensions: .VTK, .VTKIMAGE, .vtk, .vtkimage

 
Supported element types:
binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit

 

EXAMPLE

Create an image output.v of size <64,128,256> that contains a lattic with frequencys 8, 16, and 4 in x, y and, z-direction respectively.
mia-3dimagecreator -o lattic.v -j lattic:fx=8,fy=16,fz=4 -s "<64,128,256>"

AUTHOR(s)

Gert Wollny

COPYRIGHT

This software is Copyright (c) 1999-2015 Leipzig, Germany and Madrid, Spain. It comes with ABSOLUTELY NO WARRANTY and you may redistribute it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the option '--copyright'.