SYNOPSIS
mia-3dlerp -1 <first> -2 <second> -o <out-file> -p <positions> [options]DESCRIPTION
mia-3dlerp merge two images by linear combination.OPTIONS
-
- -1 --first=(input, required); io
- first input image For supported file types see PLUGINS:3dimage/io
- -2 --second=(input, required); io
- second input image For supported file types see PLUGINS:3dimage/io
- -o --out-file=(output, required); io
- linearly interpolated image For supported file types see PLUGINS:3dimage/io
- -p --positions=(required); vfloat
- image series positions (first, target, second)
Help & Info
-
- -V --verbose=warning
-
verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:
- info - Low level messages
- trace - Function call trace
- fail - Report test failures
- warning - Warnings
- error - Report errors
- debug - Debug output
- message - Normal messages
- fatal - Report only fatal errors
- --copyright
- print copyright information
- -h --help
- print this help
- -? --usage
- print a short help
- --version
- print the version number and exit
Processing
-
- --threads=-1
- Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).
Test
-
- --selftest=(); None
- run a self test of the program
PLUGINS: 3dimage/io
- analyze
- Analyze 7.5 image
- Recognized file extensions: .HDR, .hdr
-
Supported element types:
- unsigned 8 bit, signed 16 bit, signed 32 bit, floating point 32 bit, floating point 64 bit
- datapool
- Virtual IO to and from the internal data pool
- Recognized file extensions: .@
- dicom
- Dicom image series as 3D
- Recognized file extensions: .DCM, .dcm
-
Supported element types:
- signed 16 bit, unsigned 16 bit
- hdf5
- HDF5 3D image IO
- Recognized file extensions: .H5, .h5
-
Supported element types:
- binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, signed 64 bit, unsigned 64 bit, floating point 32 bit, floating point 64 bit
- inria
- INRIA image
- Recognized file extensions: .INR, .inr
-
Supported element types:
- signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit
- mhd
- MetaIO 3D image IO using the VTK implementation (experimental).
- Recognized file extensions: .MHA, .MHD, .mha, .mhd
-
Supported element types:
- signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit
- nifti
- NIFTI-1 3D image IO
- Recognized file extensions: .NII, .nii
-
Supported element types:
- signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, signed 64 bit, unsigned 64 bit, floating point 32 bit, floating point 64 bit
- vff
- VFF Sun raster format
- Recognized file extensions: .VFF, .vff
-
Supported element types:
- unsigned 8 bit, signed 16 bit
- vista
- Vista 3D
- Recognized file extensions: .V, .VISTA, .v, .vista
-
Supported element types:
- binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit
- vti
- 3D image VTK-XML in- and output (experimental).
- Recognized file extensions: .VTI, .vti
-
Supported element types:
- signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit
- vtk
- 3D VTK image legacy in- and output (experimental).
- Recognized file extensions: .VTK, .VTKIMAGE, .vtk, .vtkimage
-
Supported element types:
- binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit
EXAMPLE
Combine image inputA.v and inputB.v by using position coordinates 4, 7, and 9. This means the output pixel values will be evaluated according to
(9-7)/(9-4) * A + (7-4)/(9-4) * B
The result image will be written to output.v
- mia-3dlerp -1 inputA.v -2 inputB.v -p 4,7,9 -o output.v
AUTHOR(s)
Gert WollnyCOPYRIGHT
This software is Copyright (c) 1999-2015 Leipzig, Germany and Madrid, Spain. It comes with ABSOLUTELY NO WARRANTY and you may redistribute it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the option '--copyright'.