nps2gps(1) convert nucleotide-protein sets to ASN.1 genomic product sets


nps2gps [-] [-D] [-F] [-G str] [-L] [-N] [-P] [-Q] [-R] [-T] [-U] [-f str] [-i filename] [-o filename] [-p path] [-r path] [-x str]


nps2gps converts NCBI Bioseq-sets from simple nucleotide-protein sets to full genomic product sets complete with mRNA transcripts, which it outputs as text ASN.1.


A summary of options is included below.
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RefSeq mRNA Titles
Map by Feature ID
-G str
General ID database name
Lock components in advance
Promote Non-coding RNAs
mRNA ID from Protein
Special mRNA titles
Enable Remote fetching from ID
Map by Transcript ID
Remove Unnecessary gene cross-references
-f str
Substring filter
-i filename
Single input file (default = stdin)
-o filename
Single output file (default = stdout)
-p path
Path to files for batch conversion
-r path
Path for results of batch conversion
-x str
File selection suffix for batch conversion (default = .ent)


The National Center for Biotechnology Information.