SYNOPSIS

nps2gps [-] [-D] [-F] [-G str] [-L] [-N] [-P] [-Q] [-R] [-T] [-U] [-f str] [-i filename] [-o filename] [-p path] [-r path] [-x str]

DESCRIPTION

nps2gps converts NCBI Bioseq-sets from simple nucleotide-protein sets to full genomic product sets complete with mRNA transcripts, which it outputs as text ASN.1.

OPTIONS

A summary of options is included below.

-

Print usage message

-D

RefSeq mRNA Titles

-F

Map by Feature ID

-G str

General ID database name

-L

Lock components in advance

-N

Promote Non-coding RNAs

-P

mRNA ID from Protein

-Q

Special mRNA titles

-R

Enable Remote fetching from ID

-T

Map by Transcript ID

-U

Remove Unnecessary gene cross-references

-f str

Substring filter

-i filename

Single input file (default = stdin)

-o filename

Single output file (default = stdout)

-p path

Path to files for batch conversion

-r path

Path for results of batch conversion

-x str

File selection suffix for batch conversion (default = .ent)

AUTHOR

The National Center for Biotechnology Information.