pc-compare(1) Program for scoring alignments according to a reference alignment with respect to sum-of-pairs and column scores.

SYNOPSIS

pc-compare [TEST_ALIGNMENT] [REFERENCE_ALIGNMENT] [BALIBASE_ANNOT_FILE] [-col] [-core] [-caps] [-annot FILENAME]

NOTE

pc-compare is named compare in the original sources, but has been remamed to avoid collision with other program names.

REFERENCE

Please cite Do, C.B., Mahabhashyam, M.S.P., Brudno, M., and Batzoglou, S. 2005. PROBCONS: Probabilistic Consistency-based Multiple Sequence Alignment. Genome Research 15: 330-340.

AUTHORS

Chuong Do <[email protected]>

Wrote probcons in collaboration with Michael Brudno in the research group of Serafim Batzoglou, Department of Computer Science, Stanford University.

Charles Plessy <[email protected]>

Wrote this manpage in DocBook XML for the Debian distribution.

COPYRIGHT

This program and its manpage are in the public domain.

SEE ALSO

LAST SEARCHED