Massage SGD annotation flat files into a version suitable for the Generic Genome Browser


% > yeast.gff


This script massages the SGD sequence annotation flat files located at into a version of the GFF format suitable for display by the generic genome browser.

To use this script, get the SGD file from the FTP site listed above, and run the following command:

  % > yeast.gff

The yeast.gff file can then be loaded into a Bio::DB::GFF database using the following command:

  % -d <databasename> yeast.gff


Lincoln Stein, [email protected]

Copyright (c) 2002 Cold Spring Harbor Laboratory

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for disclaimers of warranty.