man prophecy (1): Create frequency matrix or profile from a multiple alignment

SYNOPSIS

prophecy -sequence seqset -type list -datafile matrixf -name string -threshold integer -open float -extension float -outfile outfile
prophecy -help

DESCRIPTION

prophecy

is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). It is part of the "Nucleic:Profiles,Protein:Profiles" command group(s).

OPTIONS

Input section

-sequence seqset

-type list

: Default value: F

-datafile matrixf

: Default value: @($(type) = G: Epprofile H: EBLOSUM62 F: EBLOSUM62)

Required section

-name string

: Default value: mymatrix

Profile type specific options

-threshold integer

: Default value: 75

Gap options

-open float

: Default value: 3.0

-extension float

: Default value: 0.3

Output section

-outfile outfile

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

AUTHOR

Debian Med Packaging Team <[email protected]>

: Wrote the script used to autogenerate this manual page.

COPYRIGHT

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.