SYNOPSIS
reconcile [OPTIONS] gene-tree species-tree [gene-species-map]
DESCRIPTION
This program outputs the reconciliation that minimizes the number of duplications
OPTIONS
- --help
- Display help (this text).
- -V, --version
- Print version and exit
- -r, --reroot any|random|no
- Reroot the tree to minimize the number of implied duplications/losses if the most parsimonious reconciliation is chosen. Default is "no".
- -w --weights FLOAT FLOAT
-
Determine the relative importance of duplications vs losses. First weight is for duplications and the second for losses. The default is 1.0,0.0 which counts duplications only. Weights are required to be positive.
EXIT STATUS
- 0
- Successful program execution.
- 1
-
Some error occurred
URL
- The prime-phylo home page: http://prime.sbc.su.se
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