saint-spc-noctrl(1) run SAINT scoring algorithm for protein-protein interaction data using label free quantitative proteomics data


saint-spc-noctrl [interactionFile] [preyFile] [baitFile] [nburnin] [niter] [fthres] [fgroup] [var] [normalize]


-burnin and iter: burn-in period and main iteration of MCMC

-fthres: frequency threshold above which probability is set to 0

-fgroup: frequency boundary dividing high and low frequency groups

-var: binary [0/1] indicator for modeling variance of the count data distributions

-normalize: whether to normalize the counts by total spectral counts