DESCRIPTION

Index ========== Creates a salmon index.

Command Line Options:

-v [ --version ]

print version string

-h [ --help ]

produce help message

-t [ --transcripts ] arg

Transcript fasta file.

-i [ --index ] arg

Salmon index.

-p [ --threads ] arg (=2) Number of threads to use (only used for computing

bias features)

-s [ --sasamp ] arg (=1)

The interval at which the suffix array should be sampled. Smaller values are faster, but produce a larger index. The default should be OK, unless your transcriptome is huge. This value should be a power of 2.