man textsearch (1): Search the textual description of sequence(s)

SYNOPSIS

textsearch -sequence seqall -pattern string [-casesensitive boolean] [-html boolean] -only boolean -heading boolean -usa boolean -accession boolean -name boolean -description boolean -outfile outfile
textsearch -help

DESCRIPTION

textsearch

is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). It is part of the "Data retrieval:Text data" command group(s).

OPTIONS

Input section

-sequence seqall

Required section

-pattern string

: The search pattern is a regular expression. Use a | to indicate OR. For example: human|mouse will find text with either 'human' OR 'mouse' in the text

Additional section

-casesensitive boolean

: Default value: N

Output section

-html boolean

: Default value: N

-only boolean

: This is a way of shortening the command line if you only want a few things to be displayed. Instead of specifying: '-nohead -noname -nousa -noacc -nodesc' to get only the name output, you can specify '-only -name' Default value: N

-heading boolean

: Default value: @(!$(only))

-usa boolean

: Default value: @(!$(only))

-accession boolean

: Default value: @(!$(only))

-name boolean

: Default value: @(!$(only))

-description boolean

: Default value: @(!$(only))

-outfile outfile

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

AUTHOR

Debian Med Packaging Team <[email protected]>

: Wrote the script used to autogenerate this manual page.

COPYRIGHT

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.