tree2pag(1) convert Bio::TreeIO parseable format trees to pagel format


tree2pag -if nexus -i > file.pag
# OR pipe in through STDIN, and use newick format instead
cat file.newick | tree2pag -if newick > file.nh
# OR specify an output and input
tree2pag -o file.pag -i file.newick


Convert TreeIO parseable files into Pagel format tree files. Be warned that pagel format only really supports a single tree per file so. Also Pagel parsing is not yet available in bioperl.