xtractore(1)
extract sequences corresponding to annotated features from the given sequence file
SYNOPSIS
xtractore
[,options/] ,features.gff3 sequences.fasta/
DESCRIPTION
Options:
- -d|--debug
-
print debugging output
- -h|--help
-
print this help message and exit
- -i|--idfile: FILE
-
file containing a list of feature IDs (1 per line
with no spaces); if provided, only features with
IDs in this file will be extracted
- -o|--outfile: FILE
-
file to which output sequences will be written;
default is terminal (stdout)
- -t|--type: STRING
-
feature type to extract; can be used multiple
times to extract features of multiple types
- -v|--version
-
print version number and exit
- -V|--verbose
-
print verbose warning and error messages
- -w|--width: INT
-
width of each line of sequence in the Fasta
output; default is 80; set to 0 for no
formatting
