xtractore(1) extract sequences corresponding to annotated features from the given sequence file


xtractore [,options/] ,features.gff3 sequences.fasta/


print debugging output
print this help message and exit
-i|--idfile: FILE
file containing a list of feature IDs (1 per line with no spaces); if provided, only features with IDs in this file will be extracted
-o|--outfile: FILE
file to which output sequences will be written; default is terminal (stdout)
-t|--type: STRING
feature type to extract; can be used multiple times to extract features of multiple types
print version number and exit
print verbose warning and error messages
-w|--width: INT
width of each line of sequence in the Fasta output; default is 80; set to 0 for no formatting