cm_to_wigeon(1) helper for wigeon (Pintail 16S DNA anomaly detection)


Unfortunately this tools that comes in connection with wigeon(1) is not documented but it regards the options below. If you know better about its purpose please drop us a note using reportbug on your Debian system.



multi-fasta file containing query sequences in alignment format
db in NAST format
db in fasta format (megablast formatted)

Common options

number of top matching database sequences to compare to (default 15)
min divergence ratio default: 1.007
min percent identity among matching sequences (default 90)

Parameters to tune ChimeraMaligner:

Scoring parameters:
match score (default: +5)
mismatch penalty (default: -4)
min query coverage by matching database sequence (default: 70)
maximum traverses of the multiple alignment (default: 1)


(default off)
cd here before running


This manual page was written by Andreas Tille <[email protected]> but can be freely used for any other distribution.