DESCRIPTIONcoils-wrap runs ncoils three times to give you a three-window output.
ncoils is a program that compares a sequence to a database of known parallel two-stranded coiled-coils and derives a similarity score. By comparing this score to the distribution of scores in globular and coiled-coil proteins, the program then calculates the probability that the sequence will adopt a coiled-coil conformation.
- input file in FASTA format
- output file
- raw output file, default: `<output file>_raw'
- matrix type; set matrix (MTK or MTIDK)
- weight a&d = b,c,e,f&g (boolean)
EXAMPLES"coils-wrap -m MTIDK -i /usr/share/doc/ncoils/1srya.fa -o /tmp/coils.out -r /tmp/coils_raw.txt && less /tmp/coils.out /tmp/coils_raw.txt"
"ncoils -win 14 < /usr/share/doc/ncoils/1srya.fa"
- matrix data files
AUTHORR.B. Russell, A.N. Lupas, 1999
COPYRIGHT AND LICENSEGPL
Based on Lupas, Van Dyck & Stock (1991) Science 252,1162-1164