SYNOPSIS
/usr/share/librg-utils-perl/dbSwiss [OPTIONS]/usr/share/librg-utils-perl/dbSwiss --datadir /data/swissprot --infile /data/swissprot/uniprot_sprot.dat
/usr/share/librg-utils-perl/dbSwiss [--help] [--man]
DESCRIPTION
dbSwiss creates DBM version of Swiss-Prot data. This procedure is to replace splitSwiss.pl. splitSwiss.pl saves Swiss-Prot records in separate files resulting in over 13 million relatively tiny files that take very long to create and rsync. dbSwiss instead saves each record into a DBM database that is optimized for fast retrieval.OPTIONS
- -d, --datadir=path
- directory of database files, default: '/mnt/project/rost_db/data/swissprot'
- --debug
- --nodebug
- --first20
- --nofirst20
- process only first 20 records, for debugging
- --help
- -i, --infile=path
- Swiss-Prot data flatfile, default: '/mnt/project/rost_db/data/swissprot/uniprot_sprot.dat'.
- --man
- --quiet
- --noquiet
- do not print progress status
- --readback
- --noreadback
- read records back after storing and print them
- --table
- name of database table and consequently the base name of database files, default: 'dbswiss'
- --version
- -w, --workdir=path
- Optional working directory. Automatically created and removed if not defined.