DESCRIPTION

usage: fastaq_trim_contigs [options] <infile> <outfile>

Trims a set number of bases off the end of every contig, so gaps get bigger and contig ends are removed. Bases are replaced with Ns. Any sequence that ends up as all Ns is lost

positional arguments:

infile

Name of input file

outfile

Name of output file

optional arguments:

-h, --help

show this help message and exit

--trim_number TRIM_NUMBER

Number of bases to trim around each gap, and off ends of each sequence [100]