fastq_quality_trimmer(1) Filters sequences based on quality


usage: fastq_quality_trimmer [-h] [-v] [-t N] [-l N] [-z] [-i INFILE] [-o OUTFILE] Part of FASTX Toolkit by A. Gordon ([email protected])
= This helpful help screen.
[-t N]
= Quality threshold - nucleotides with lower
quality will be trimmed (from the end of the sequence).
[-l N]
= Minimum length - sequences shorter than this (after trimming)
will be discarded. Default = 0 = no minimum length.
= Compress output with GZIP.
= FASTQ input file. default is STDIN.
[-o OUTFILE] = FASTQ output file. default is STDOUT. [-v] = Verbose - report number of sequences.
If [-o] is specified,
report will be printed to STDOUT.
If [-o] is not specified (and output goes to STDOUT), report will be printed to STDERR.