godef(1) Find GO ontology terms by definition


godef -query string [-namespace list] -subclasses boolean -obsolete boolean -godef outobo
godef -help



is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). It is part of the "Ontology:GO,Data retrieval:Ontology data" command group(s).


Input section

-query string

Additional section

-namespace list

By default all terms are returned. Searches can be limited to one or a few namespaces. Default value: *

Advanced section

-subclasses boolean

Extend the query matches to include all terms which are specialisations (GO sub-classes) of the matched type. Default value: N

-obsolete boolean

The default behaviour is to not use or return obsolete terms. This option if set will include all terms. Default value: N

Output section

-godef outobo


Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).


Debian Med Packaging Team <[email protected]>

Wrote the script used to autogenerate this manual page.


This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.