SYNOPSISquality_check [Options] SAMFILE
DESCRIPTIONPerform a sanity check on the mapping results (SAM file).
This tool analyzes the output of the read mapper and provides useful information to the user to decide whether the set of reference sequences and the mapper settings are feasible for the given dataset.
- Name of the SAM file to analyze
- -h, --help
- show this help message and exit
- -o OUT, --outpath=OUT
Path to the directory for the analysis output.