• Bio::Tools::AlignFactory
• Bio::Tools::Alignment::Consed
• Bio::Tools::Alignment::Trim
• Bio::Tools::AmpliconSearch
• Bio::Tools::Analysis::DNA::ESEfinder
• Bio::Tools::Analysis::Protein::Domcut
• Bio::Tools::Analysis::Protein::ELM
• Bio::Tools::Analysis::Protein::GOR4
• Bio::Tools::Analysis::Protein::HNN
• Bio::Tools::Analysis::Protein::Mitoprot
• Bio::Tools::Analysis::Protein::NetPhos
• Bio::Tools::Analysis::Protein::Scansite
• Bio::Tools::Analysis::Protein::Sopma
• Bio::Tools::Analysis::SimpleAnalysisBase
• Bio::Tools::AnalysisResult
• Bio::Tools::Blat
• Bio::Tools::CodonTable
• Bio::Tools::Coil
• Bio::Tools::dpAlign
• Bio::Tools::ECnumber
• Bio::Tools::EMBOSS::Palindrome
• Bio::Tools::EPCR
• Bio::Tools::Eponine
• Bio::Tools::ERPIN
• Bio::Tools::Est2Genome
• Bio::Tools::ESTScan
• Bio::Tools::EUtilities
• Bio::Tools::EUtilities::Cookie
• Bio::Tools::EUtilities::EUtilDataI
• Bio::Tools::EUtilities::EUtilParameters
• Bio::Tools::EUtilities::History
• Bio::Tools::EUtilities::HistoryI
• Bio::Tools::EUtilities::Info
• Bio::Tools::EUtilities::Info::FieldInfo
• Bio::Tools::EUtilities::Info::LinkInfo
• Bio::Tools::EUtilities::Link
• Bio::Tools::EUtilities::Link::LinkSet
• Bio::Tools::EUtilities::Link::UrlLink
• Bio::Tools::EUtilities::Query
• Bio::Tools::EUtilities::Query::GlobalQuery
• Bio::Tools::EUtilities::Summary
• Bio::Tools::EUtilities::Summary::DocSum
• Bio::Tools::EUtilities::Summary::Item
• Bio::Tools::EUtilities::Summary::ItemContainerI
• Bio::Tools::Fgenesh
• Bio::Tools::FootPrinter
• Bio::Tools::Gel
• Bio::Tools::Geneid
• Bio::Tools::Genemark
• Bio::Tools::Genewise
• Bio::Tools::Genomewise
• Bio::Tools::Genscan
• Bio::Tools::GFF
• Bio::Tools::Glimmer
• Bio::Tools::Grail
• Bio::Tools::GuessSeqFormat
• Bio::Tools::HMMER::Domain
• Bio::Tools::HMMER::Results
• Bio::Tools::HMMER::Set
• Bio::Tools::Hmmpfam
• Bio::Tools::Infernal
• Bio::Tools::ipcress
• Bio::Tools::isPcr
• Bio::Tools::IUPAC
• Bio::Tools::Lucy
• Bio::Tools::Match
• Bio::Tools::MZEF
• Bio::Tools::OddCodes
• Bio::Tools::Phylo::Gerp
• Bio::Tools::Phylo::Gumby