• Bio::PopGen::Simulation::GeneticDrift
• Bio::PopGen::Statistics
• Bio::PopGen::TagHaplotype.pm
• Bio::PopGen::Utilities
• Bio::PrimarySeq
• Bio::PrimarySeqI
• Bio::PrimerDesigner
• Bio::PrimerDesigner::epcr
• Bio::PrimerDesigner::ispcr
• Bio::PrimerDesigner::primer3
• Bio::PrimerDesigner::Remote
• Bio::PrimerDesigner::Result
• Bio::PrimerDesigner::Table
• Bio::PullParserI
• Bio::Range
• Bio::RangeI
• Bio::Restriction::Analysis
• Bio::Restriction::Enzyme
• Bio::Restriction::Enzyme::MultiCut
• Bio::Restriction::Enzyme::MultiSite
• Bio::Restriction::EnzymeCollection
• Bio::Restriction::EnzymeI
• Bio::Restriction::IO
• Bio::Restriction::IO::bairoch
• Bio::Restriction::IO::base
• Bio::Restriction::IO::itype2
• Bio::Restriction::IO::prototype
• Bio::Restriction::IO::withrefm
• Bio::Roary
• Bio::Roary::AccessoryBinaryFasta
• Bio::Roary::AccessoryClustering
• Bio::Roary::AnalyseGroups
• Bio::Roary::AnnotateGroups
• Bio::Roary::AssemblyStatistics
• Bio::Roary::BedFromGFFRole
• Bio::Roary::ChunkFastaFile
• Bio::Roary::ClustersRole
• Bio::Roary::CombinedProteome
• Bio::Roary::CommandLine::AssemblyStatistics
• Bio::Roary::CommandLine::Common
• Bio::Roary::CommandLine::CreatePanGenome
• Bio::Roary::CommandLine::ExtractProteomeFromGff
• Bio::Roary::CommandLine::GeneAlignmentFromNucleotides
• Bio::Roary::CommandLine::IterativeCdhit
• Bio::Roary::CommandLine::ParallelAllAgainstAllBlastp
• Bio::Roary::CommandLine::QueryRoary
• Bio::Roary::CommandLine::Roary
• Bio::Roary::CommandLine::RoaryCoreAlignment
• Bio::Roary::CommandLine::RoaryPostAnalysis
• Bio::Roary::CommandLine::RoaryReorderSpreadsheet
• Bio::Roary::CommandLine::TransferAnnotationToGroups
• Bio::Roary::ContigsToGeneIDsFromGFF
• Bio::Roary::Exceptions
• Bio::Roary::External::Blastp
• Bio::Roary::External::Cdhit
• Bio::Roary::External::CheckTools
• Bio::Roary::External::Fasttree
• Bio::Roary::External::GeneAlignmentFromNucleotides
• Bio::Roary::External::IterativeCdhit
• Bio::Roary::External::Mafft
• Bio::Roary::External::Makeblastdb
• Bio::Roary::External::Mcl
• Bio::Roary::External::PostAnalysis
• Bio::Roary::External::Prank
• Bio::Roary::ExtractCoreGenesFromSpreadsheet
• Bio::Roary::ExtractProteomeFromGFF
• Bio::Roary::ExtractProteomeFromGFFs
• Bio::Roary::FilterFullClusters
• Bio::Roary::FilterUnknownsFromFasta
• Bio::Roary::GeneNamesFromGFF